264868 DEXDcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264868	chr_22	DEXDc	903326	904605	+	DEXDc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449430	Thaps264868.2, Thaps264868.1, Thaps264868.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0263

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0039	0.52	1.1 1.5

Most Highly Correlated Transcripts

2065 hypothetical protein 0.9385	262171 CAP_ED 0.9283	263191 PLN03076 0.9258	8657 hypothetical protein 0.9241	993 PROCN superfamily 0.9231	263859 GH18_chitinase-like superfamily 0.9189
9910 Peptidase_C19 superfamily 0.9178	33225 MYSc 0.9144	262826 DUF3608 superfamily 0.912	2941 hypothetical protein 0.9119

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	cl17251	92.0152	1.14E-22	26 - 168	specific	238005
DEXDc superfamily		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	92.0152	1.14E-22	26 - 168	superfamily	266587

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	165701	Not available	Cre03.g208833.t1.1	AT1G35530.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

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