993 PROCN superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
993	chr_1	PROCN superfamily	350464	356582	-	PROCN superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447658	Thaps993.5, Thaps993.10, Thaps993.9, Thaps993.2, Thaps993.3, Thaps993.4, Thaps993.6, Thaps993.1, Thaps993.8, Thaps993.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0162

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0014	0.46	2.6 6.6

Most Highly Correlated Transcripts

262826 DUF3608 superfamily 0.9262	264868 DEXDc 0.9231	33225 MYSc 0.9208	11399 hypothetical protein 0.9191	263191 PLN03076 0.9182	20349 GH38-57_N_LamB_YdjC_SF superfamily 0.9176
27435 PAH 0.9173	2941 hypothetical protein 0.9127	36273 Alpha_ANH_like_IV 0.9121	2958 PROCN 0.9109

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PROCN superfamily		PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8...	-	417.21	2.69E-131	858 - 1166	superfamily	116688
PRO8NT superfamily		PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA...	-	281.129	8.58E-87	456 - 620	superfamily	149261
PRO8NT superfamily		PRO8NT (NUC069), PrP8 N-terminal domain; The PRO8NT domain is found at the N-terminus of pre-mRNA...	-	281.129	8.58E-87	456 - 620	superfamily	149261
MPN superfamily		Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains...	-	194.383	4.99E-55	1607 - 1710	superfamily	265414
RRM_4 superfamily		RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome...	-	128.13	5.32E-34	1330 - 1423	superfamily	192639
RRM_4 superfamily		RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome...	-	128.13	5.32E-34	1330 - 1423	superfamily	192639
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	93.9504	8.75E-21	1513 - 1559	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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