264946 MA3Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264946	chr_24	MA3	163092	164376	+	MA3

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452014	Thaps264946.2, Thaps264946.3, Thaps264946.1, Thaps264946.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0362

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0109	0.50	0.00000011 0.067

Most Highly Correlated Transcripts

261925 PP2Cc 0.85	20619 hypothetical protein 0.8171	16114 PLN02350 0.8076	33497 MEMO_like 0.8045	25198 HA 0.8009	33353 TRX_family 0.7971
264420 PseudoU_synth_EcTruA 0.7965	13448 Sec1 0.7959	22551 HA 0.7955	264556 FBPase 0.7916

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
MA3		MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain...	cl02653	96.9389	9.52E-25	62 - 172	specific	111714
MA3 superfamily		MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain...	-	80.7605	5.19E-19	221 - 340	superfamily	243129
MA3 superfamily		MA3 domain; Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain...	-	80.7605	5.19E-19	221 - 340	superfamily	243129

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50049	PHATRDRAFT_50049	269489	322787	106249	Cre09.g415800.t1.2	AT5G63190.2	356091

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004437 -

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