2653 CH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2653 chr_2 CH 1514597 1520968 + CH

Synonyms

NCBI ID Ensembl Genomes exon ID
7446665 Thaps2653.2, Thaps2653.4, Thaps2653.3, Thaps2653.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0076

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9614

bd843

(bd843) NA
0.9608

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9443

bd529

(bd529) SNF2_N
0.9366

bd950

(bd950) NA
0.9239

24333

hypothetical protein
0.9147

9024

hypothetical protein
0.9107

bd1893

(bd1893) NA
0.9079

bd1214

(bd1214) KISc_C_terminal
0.9074

bd758

(bd758) NA
0.907

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CH Calponin homology (CH) domain; The CH domain is found in both cytoskeletal proteins and signal... cl00030 67.6952 6.19E-13 684 - 800 specific 249759
CH superfamily Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem... - 67.6952 6.19E-13 684 - 800 superfamily 260145

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35233 PHATRDRAFT_35233 264002 152797 108540 Cre06.g281200.t1.1 AT4G21820.1 511790

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003779 -

GO:0003779

actin binding

Details: 
Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
GO Category: 
MF

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