26022 Pam16 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
26022	chr_13	Pam16 superfamily	539647	541057	-	Pam16 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447824	Thaps26022.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0326

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0192	0.36	540 1900

Most Highly Correlated Transcripts

268027 Met_10 0.9159	5104 hypothetical protein 0.9054	37928 PLN03238 0.9041	23812 TrmA 0.9025	4372 hypothetical protein 0.9011	21979 DUF2373 superfamily 0.9002
6835 DUF947 0.8983	262862 rimM 0.8973	28755 NSA2 0.8973	23210 hypothetical protein 0.8957

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pam16 superfamily		Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated...	-	64.5983	4.32E-14	12 - 126	superfamily	252088

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44606	PHATRDRAFT_44606	168549	192121	Not available	Cre09.g412300.t1.2	AT3G59280.1	562549

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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