268238 PRK05192Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268238	chr_2	PRK05192	798595	801165	-	PRK05192

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446520	Thaps268238.3, Thaps268238.2, Thaps268238.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0229

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0270	0.28	60 4100

Most Highly Correlated Transcripts

bd190 (bd190) SrmB 0.9561	40223 PLN02347 0.9356	27873 PLN02274 0.9347	bd1876 (bd1876) NatB_MDM20 superfamily 0.9328	34006 Sun 0.9287	bd1945 (bd1945) NA 0.9253
22404 DEXDc superfamily 0.9238	40341 WD40 superfamily 0.9215	22672 hypothetical protein 0.9208	2920 PRK05764 0.9208

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GIDA_assoc_3 superfamily		GidA associated domain 3; The GidA associated domain 3 is a motif that has been identified at the C...	-	67.9244	8.62E-14	674 - 739	superfamily	258194
GIDA_assoc_3 superfamily		GidA associated domain 3; The GidA associated domain 3 is a motif that has been identified at the C...	-	67.9244	8.62E-14	674 - 739	superfamily	258194
PRK05192		tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated	-	819.285	0	93 - 745	multi-dom	235362

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_19579	PHATRDRAFT_19579	258995	257025	414448	Cre10.g428678.t1.1	AT2G13440.1	527564

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 GO:0015036 GO:0005554 -

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