40341 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40341	chr_4	WD40 superfamily	1263029	1264696	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446107	Thaps40341.1, Thaps40341.3, Thaps40341.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0257	0.20	5.4 79

Most Highly Correlated Transcripts

21397 Nop52 superfamily 0.953	bd96 (bd96) eIF-3_zeta 0.9438	22672 hypothetical protein 0.9429	34729 NGP_1 0.942	34006 Sun 0.9402	33718 Methyltransf_4 superfamily 0.9387
31415 hypothetical protein 0.9375	39022 COG2319 0.9358	1374 RRM 0.9354	40223 PLN02347 0.9338

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	120.132	3.41E-31	46 - 319	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	109.408	1.17E-26	39 - 331	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_17974	PHATRDRAFT_17974	Not available	258051	465724	Cre06.g278175.t1.1	AT4G21130.1	294254

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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