268350 SpoU_methylase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268350 chr_2 SpoU_methylase 1964308 1965704 - SpoU_methylase

Synonyms

NCBI ID Ensembl Genomes exon ID
7452336 Thaps268350.4, Thaps268350.3, Thaps268350.2, Thaps268350.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0270
 0.28

Most Highly Correlated Transcripts

21397

Nop52 superfamily
0.9071

24038

hypothetical protein
0.9048

15424

hypothetical protein
0.9045

41419

(RT4) RpsD
0.9007

268880

WD40 superfamily
0.8993

34413

RRM_ABT1_like
0.8992

262775

RBFA
0.8985

22139

Cyt_C5_DNA_methylase superfamily
0.898

10853

hypothetical protein
0.8972

31415

hypothetical protein
0.8956

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 106.825 6.95E-28 184 - 352 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 106.825 6.95E-28 184 - 352 superfamily 266618
rRNA_methyl_3 rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [... - 76.2279 2.23E-16 134 - 357 multi-dom 129290

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 238567 56158 469008 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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