268451 SrmB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268451 chr_3 SrmB 654216 656301 + SrmB

Synonyms

NCBI ID Ensembl Genomes exon ID
7444076 Thaps268451.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0228

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0165
 0.36

Most Highly Correlated Transcripts

18557

HrpA
0.8811

39812

Sun
0.8785

42543

2OG-FeII_Oxy_2
0.8747

17292

Spb1_C superfamily
0.8733

bd96

(bd96) eIF-3_zeta
0.8661

8259

hypothetical protein
0.8548

3189

hypothetical protein
0.8526

40402

SrmB
0.8518

34533

AAA_11
0.8475

11434

hypothetical protein
0.8456

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEAD DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases... cl17251 81.5252 8.13E-18 120 - 262 specific 249732
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 81.5252 8.13E-18 120 - 262 superfamily 266587
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 87.5381 2.27E-18 111 - 262 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 164244 183532 420596 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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