18557 HrpA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18557 chr_4 HrpA 2236064 2240705 - HrpA

Synonyms

NCBI ID Ensembl Genomes exon ID
7452252 Thaps18557.2, Thaps18557.3, Thaps18557.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0278
 0.24

Most Highly Correlated Transcripts

40402

SrmB
0.9215

12982

AAA superfamily
0.9093

35510

SET
0.8986

31404

XRN1
0.8895

17292

Spb1_C superfamily
0.8856

12259

COG1204
0.8832

17271

FtsJ
0.8812

268451

SrmB
0.8811

39812

Sun
0.8749

14109

SrmB
0.8734

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 95.0968 5.41E-22 542 - 717 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 95.0968 5.41E-22 542 - 717 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 72.6351 6.35E-15 1012 - 1093 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 72.6351 6.35E-15 1012 - 1093 superfamily 262181
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 502.235 8.76E-158 464 - 1317 multi-dom 224557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_708 PHATRDRAFT_708 194942 205015 Not available Not available AT1G33390.1 518292

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

Add comment

Log in to post comments