269141 TPR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269141 chr_6 TPR 1309418 1312276 - TPR

Synonyms

NCBI ID Ensembl Genomes exon ID
7453272 Thaps269141.1, Thaps269141.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0326

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0029
 0.39

Most Highly Correlated Transcripts

4108

hypothetical protein
0.977

bd690

(bd690) NA
0.9223

bd1934

(bd1934) NA
0.8936

bd1756

(bd1756) NA
0.8843

bd1840

(bd1840) NA
0.8815

bd643

(bd643) NA
0.8799

bd1839

(bd1839) NA
0.8725

268788

(Tp_Myb1R_SHAQKYF3) MYB DNA binding protein/ transcription factor-like protein
0.8655

18662

ADK
0.8626

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8616

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 60.4716 3.34E-11 141 - 239 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 60.4716 3.34E-11 141 - 239 superfamily 238112

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48786 PHATRDRAFT_48786 167886 288074 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005622 GO:0006396 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

Add comment

Log in to post comments