262141 (Tp_AP2-EREBP5) pathogenesis-related transcription factor
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262141 chr_4 (Tp_AP2-EREBP5) pathogenesis-related transcription factor 920633 922933 + pathogenesis-related transcription factor

Synonyms

NCBI ID Ensembl Genomes exon ID
7453348 Thaps262141.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0478

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0001
 0.47

Most Highly Correlated Transcripts

bd2073

(bd2073) psbB
0.9223

bd1893

(bd1893) NA
0.9125

bd463

(bd463) Aa_trans superfamily
0.8985

bd1313

(bd1313) psbH
0.8879

32704

PKc_like superfamily
0.8871

bd1387

(bd1387) psbE
0.8731

bd137

(bd137) Motor_domain superfamily
0.8725

586

PTZ00018
0.8705

32217

MA3
0.8684

269233

(Tp_HSF_3.4d) HSF_DNA-bind
0.8677

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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