269254 (Tp_E2F-DP2) E2F_TDP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269254 chr_7 (Tp_E2F-DP2) E2F_TDP 1141331 1142569 + E2F_TDP

Synonyms

NCBI ID Ensembl Genomes exon ID
7444159 Thaps269254.2, Thaps269254.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0350

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9119

10873

NA
0.8457

32217

MA3
0.845

5694

hypothetical protein
0.838

25527

hypothetical protein
0.8319

19126

(Tp_CCCH12) YTH1
0.8308

264043

(MYB15) MYB DNA binding protein/ transcription factor-like protein
0.8304

37862

S_TKc
0.8304

261180

LRR_RI superfamily
0.8296

33287

(UBA2) Ube1
0.8269

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
E2F_TDP superfamily E2F/DP family winged-helix DNA-binding domain; This family contains the transcription factor E2F... - 96.8675 2.37E-25 237 - 320 superfamily 251219
E2F_TDP superfamily E2F/DP family winged-helix DNA-binding domain; This family contains the transcription factor E2F... - 96.8675 2.37E-25 237 - 320 superfamily 251219

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47264 PHATRDRAFT_47264 235052 218699 465850 Cre01.g052300.t1.1 AT1G47870.2 313263

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000074 GO:0003700 GO:0005667 GO:0006355 -

GO:0000074

NA

Details: 
NA
GO Category: 
NA

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005667

transcription factor complex

Details: 
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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