269263 (DHC1_2) DHC_N2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269263 chr_7 (DHC1_2) DHC_N2 1261163 1274173 + DHC_N2

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0410

Most Highly Correlated Transcripts

268346

hypothetical protein
0.9151

25593

hypothetical protein
0.9028

23207

hypothetical protein
0.9018

268943

MPP_PPP_family
0.9009

21997

TPR_12
0.9002

20865

DUF1162 superfamily
0.8992

22620

(Tp_AP2-EREBP1) regulator [Rayko]
0.8989

10815

Peptidase_S41_TRI
0.8968

5760

SART-1
0.8959

262371

AAA_12 superfamily
0.8934

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DHC_N2 superfamily Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic... - 386.938 5.24E-119 1107 - 1518 superfamily 254773
DHC_N2 superfamily Dynein heavy chain, N-terminal region 2; Dyneins are described as motor proteins of eukaryotic... - 386.938 5.24E-119 1107 - 1518 superfamily 254773
DHC_N1 superfamily Dynein heavy chain, N-terminal region 1; Dynein heavy chains interact with other heavy chains to... - 298.425 2.34E-86 14 - 628 superfamily 254766
Dynein_heavy superfamily Dynein heavy chain and region D6 of dynein motor; This family represents the C-terminal region of... - 279.196 1.35E-78 3675 - 4006 superfamily 251681
AAA_9 superfamily ATP-binding dynein motor region D5; The 380 kDa motor unit of dynein belongs to the AAA class of... - 179.026 2.19E-49 3329 - 3548 superfamily 193257
MT superfamily Microtubule-binding stalk of dynein motor; the 380 kDa motor unit of dynein belongs to the AAA... - 156.736 1.75E-40 2970 - 3300 superfamily 193253
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 65.0111 2.04E-11 1985 - 2125 superfamily 267297

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 246198 Not available Not available Cre11.g476050.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0004197 GO:0006508 GO:0005524 GO:0000166 GO:0017111 GO:0003777 GO:0007018 GO:0030286 GO:0008567 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0003777

microtubule motor activity

Details: 
Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
GO Category: 
MF

GO:0007018

microtubule-based movement

Details: 
A microtubule-based process that is mediated by motor proteins and results in the movement of organelles, other microtubules, or other particles along microtubules.
GO Category: 
BP

GO:0030286

dynein complex

Details: 
Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity.
GO Category: 
CC

GO:0008567

NA

Details: 
NA
GO Category: 
NA

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