269421 P4Hc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269421 chr_9 P4Hc 431781 432960 + P4Hc

Synonyms

NCBI ID Ensembl Genomes exon ID
7449319 Thaps269421.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0037

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

bd1071

(bd1071) NA
0.81

1734

hypothetical protein
0.7762

8808

COG0398
0.7736

2375

hypothetical protein
0.7603

17396

hypothetical protein
0.7532

33454

Ac_CoA_lig_AcsA
0.7518

270334

hypothetical protein
0.7504

3698

(Tp_HSF_1a) HSF_DNA-bind
0.7455

bd1983

(bd1983) RecA-like_NTPases superfamily
0.7402

21220

KU superfamily
0.7399

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
P4Hc Prolyl 4-hydroxylase alpha subunit homologues; Mammalian enzymes catalyse hydroxylation of collagen... cl17304 85.9026 2.38E-20 216 - 332 specific 214780
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 85.9026 2.38E-20 216 - 332 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 196084 185546 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016706 GO:0019538 GO:0004656 GO:0016222 -

GO:0016706

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Details: 
Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

GO:0004656

procollagen-proline 4-dioxygenase activity

Details: 
Catalysis of the reaction: procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2.
GO Category: 
MF

GO:0016222

procollagen-proline 4-dioxygenase complex

Details: 
A protein complex that catalyzes the formation of procollagen trans-4-hydroxy-L-proline and succinate from procollagen L-proline and 2-oxoglutarate, requiring Fe2+ and ascorbate. Contains two alpha subunits that contribute to most parts of the catalytic sites, and two beta subunits that are identical to protein-disulfide isomerase.
GO Category: 
CC

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