269474 (Tp_HSF_1.2c) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269474 chr_10 (Tp_HSF_1.2c) HSF_DNA-bind 59899 62616 - HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7450793 Thaps269474.2, Thaps269474.1, Thaps269474.4, Thaps269474.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0315

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0087
 0.32

Most Highly Correlated Transcripts

bd721

(bd721) NA
0.8938

12836

EEP superfamily
0.8475

bd1787

(bd1787) GLTP
0.8436

bd1941

(bd1941) NA
0.8369

bd1959

(bd1959) NA
0.8339

20831

hypothetical protein
0.8297

13308

PLN02948
0.8222

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8193

267979

HCO3_cotransp superfamily
0.8098

bd1808

(bd1808) NA
0.8064

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 124.149 2.65E-34 50 - 152 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 124.149 2.65E-34 50 - 152 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44200 PHATRDRAFT_44200 278446 293498 Not available Cre09.g387150.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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