269616 PLN03127
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269616 chr_12 PLN03127 445948 447965 - PLN03127

Synonyms

NCBI ID Ensembl Genomes exon ID
7447533 Thaps269616.1, Thaps269616.4, Thaps269616.3, Thaps269616.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

42226

PLN03233
0.956

268714

TypA_BipA
0.9189

269399

PLN02678
0.916

42213

PLN02286
0.9121

35164

acolac_lg
0.9057

42612

pdxS
0.9024

263641

InfB
0.8961

27873

PLN02274
0.8951

268062

PRK14293
0.8949

268519

hypothetical protein
0.8903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF_Tu Elongation Factor Tu (EF-Tu) GTP-binding proteins; EF-Tu subfamily. This subfamily includes... cl17170 380.006 1.54E-131 45 - 239 specific 206671
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 380.006 1.54E-131 45 - 239 superfamily 266525
EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I,... cl02786 177.732 2.15E-54 339 - 425 specific 239678
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 177.732 2.15E-54 339 - 425 superfamily 261448
EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases... cl02787 163.447 4.57E-49 247 - 333 specific 239668
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 163.447 4.57E-49 247 - 333 superfamily 261449
PLN03127 Elongation factor Tu; Provisional - 795.185 0 2 - 430 multi-dom 178673

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23083 PHATRDRAFT_23083 214803 220646 240795 Cre06.g259150.t1.2 AT4G02930.1 354895

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003746 GO:0006414 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003746

translation elongation factor activity

Details: 
Functions in chain elongation during polypeptide synthesis at the ribosome.
GO Category: 
MF

GO:0006414

translational elongation

Details: 
The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments