269935 hisDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269935	chr_18	hisD	236488	238113	-	hisD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442948	Thaps269935.1, Thaps269935.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0429

Most Highly Correlated Transcripts

bd174 (bd174) Tim17 superfamily 0.8744	bd1125 (bd1125) LSm4 0.8533	9247 hypothetical protein 0.8471	25508 hypothetical protein 0.8461	10559 HisA_HisF 0.8456	8937 hypothetical protein 0.8363
40200 TRX_reduct 0.8327	35164 acolac_lg 0.8259	bd1124 (bd1124) LSm4 0.8244	35933 Paf67 superfamily 0.8148

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Histidinol_dh		Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps...	cl10029	405.673	1.47E-137	113 - 497	specific	119329
Histidinol_dh superfamily		Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps...	-	405.673	1.47E-137	113 - 497	superfamily	263949
hisD		histidinol dehydrogenase; This model describes a polypeptide sequence catalyzing the final step in...	-	411.526	7.81E-140	113 - 504	multi-dom	232808

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9654	PHATRDRAFT_9654	198174	213441	55632	Cre02.g077350.t1.2	AT5G63890.1	498283

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000105 GO:0004399 -

Add comment

Log in to post comments