bd1125 (bd1125) LSm4Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1125	bd_5x160	(bd1125) LSm4	5985	6404	+	LSm4

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0258

Most Highly Correlated Transcripts

bd1124 (bd1124) LSm4 0.9502	262148 Cyt-b5 0.8906	262149 Cyt-b5 0.8906	2184 hypothetical protein 0.8629	24556 hypothetical protein 0.8546	269935 hisD 0.8533
bd909 (bd909) NA 0.8445	19743 Sm_D3 0.8258	24950 hypothetical protein 0.8237	24953 hypothetical protein 0.8237

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LSm4		Like-Sm protein 4; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric...	cl00259	141.174	5.25E-44	2 - 77	specific	212470
Sm_like superfamily		Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form...	-	141.174	5.25E-44	2 - 77	superfamily	260307

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_7848	PHATRDRAFT_7848	258662	284838	59117	Cre06.g251300.t1.2	AT5G27720.1	347058

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

Not available -

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