270037 (Tp_CCCH5) RRM_U2AF35B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270037 chr_20 (Tp_CCCH5) RRM_U2AF35B 377346 378227 + RRM_U2AF35B

Synonyms

NCBI ID Ensembl Genomes exon ID
7448537 Thaps270037.2, Thaps270037.3, Thaps270037.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0056

Most Highly Correlated Transcripts

264556

FBPase
0.8975

16114

PLN02350
0.8661

263565

RNAP_I_III_AC19
0.8644

13393

PLN02321
0.8573

40200

TRX_reduct
0.8501

269624

TIM_phosphate_binding superfamily
0.849

261400

NA
0.8441

263665

(RT17) rpsQ
0.8439

23550

hypothetical protein
0.8433

22822

NTF2
0.8433

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_U2AF35B RNA recognition motif in splicing factor U2AF 35 kDa subunit B (U2AF35B); This subgroup corresponds... cl17169 172.163 5.17E-55 44 - 151 specific 240983
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 172.163 5.17E-55 44 - 151 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29958 PHATRDRAFT_29958 227931 163523 444106 Cre06.g250950.t1.2 AT1G27650.1 370516

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 GO:0003723 GO:0005634 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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