263565 RNAP_I_III_AC19
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263565 chr_9 RNAP_I_III_AC19 811155 811513 + RNAP_I_III_AC19

Synonyms

NCBI ID Ensembl Genomes exon ID
7450958 Thaps263565.2, Thaps263565.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0056

Most Highly Correlated Transcripts

39536

Zn-ribbon_RPB9
0.913

6093

hypothetical protein
0.8933

2855

hypothetical protein
0.8827

22322

PHear_NECAP
0.8817

19158

GRX_PICOT_like
0.8794

40798

IF4E
0.878

21706

S1_Rrp4
0.8778

8376

hypothetical protein
0.8757

21910

hypothetical protein
0.8732

7827

hypothetical protein
0.8729

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III; The eukaryotic AC19 subunit of RNA... cl11409 106.162 8.36E-31 23 - 99 specific 132907
RNAP_RPB11_RPB3 superfamily RPB11 and RPB3 subunits of RNA polymerase; The eukaryotic RPB11 and RPB3 subunits of RNA polymerase... - 106.162 8.36E-31 23 - 99 superfamily 264356

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12779 PHATRDRAFT_12779 174798 150745 194396 Not available AT2G29540.2 361522

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0046983 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0046983

protein dimerization activity

Details: 
The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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