270136 OAT_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270136 chr_23 OAT_like 409964 412254 + OAT_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7442690 Thaps270136.1, Thaps270136.3, Thaps270136.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

bd1939

(bd1939) NA
0.8321

263610

COG3899
0.827

263599

COG3899
0.8221

24094

hypothetical protein
0.818

12836

EEP superfamily
0.8091

23094

hypothetical protein
0.8076

24063

COG3899
0.8075

5093

hypothetical protein
0.8033

262616

(MYB22)
0.7985

6893

ANK
0.798

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-... cl18945 412.733 2.32E-140 76 - 474 specific 99735
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 412.733 2.32E-140 76 - 474 superfamily 267298
BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] - 276.35 4.32E-87 75 - 475 multi-dom 223239

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50577 PHATRDRAFT_50577 215033 191560 Not available Cre06.g278163.t1.1 AT1G80600.1 564720

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006525 GO:0008483 GO:0030170 GO:0003992 -

GO:0006525

arginine metabolic process

Details: 
The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
GO Category: 
BP

GO:0008483

transaminase activity

Details: 
Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
GO Category: 
MF

GO:0030170

pyridoxal phosphate binding

Details: 
Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO Category: 
MF

GO:0003992

N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity

Details: 
Catalysis of the reaction: 2-oxoglutarate + N(2)-acetyl-L-ornithine = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate.
GO Category: 
MF

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