1374 RRMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1374	chr_1	RRM	1356786	1357942	-	RRM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445244	Thaps1374.3, Thaps1374.2, Thaps1374.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0190	0.26	0.22 0.93

Most Highly Correlated Transcripts

31415 hypothetical protein 0.9386	36434 DUF1253 0.9377	40341 WD40 superfamily 0.9354	27873 PLN02274 0.9341	21397 Nop52 superfamily 0.9329	2921 RRM_SF 0.93
268880 WD40 superfamily 0.9259	268003 hypothetical protein 0.9257	262325 SpoU_methylase 0.9235	27083 eIF3_N superfamily 0.9203

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM		RNA recognition motif; RNA recognition motif.	cl17169	77.2487	4.32E-18	204 - 281	specific	214636
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	77.2487	4.32E-18	204 - 281	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	63.4274	1.19E-11	189 - 285	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44442	PHATRDRAFT_44442	193970	307417	Not available	Not available	Not available	501188

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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