28025 rSAM_SeCys
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28025 chr_4 rSAM_SeCys 1863293 1864399 + rSAM_SeCys

Synonyms

NCBI ID Ensembl Genomes exon ID
7451953 Thaps28025.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0012

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0283
 0.35

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9236

26991

GRX_GRXh_1_2_like
0.9182

20923

DUF1279 superfamily
0.9136

22307

TRAPP
0.9018

26769

ERG4_ERG24 superfamily
0.8963

10898

hypothetical protein
0.8957

31751

PKCI_related
0.8955

23082

hypothetical protein
0.8953

1520

hypothetical protein
0.8946

268187

(ycf19_1) COG0762
0.894

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF3641 superfamily Protein of unknown function (DUF3641); This domain family is found in bacteria and eukaryotes, and... - 235.063 4.72E-77 198 - 340 superfamily 256995
DUF3641 superfamily Protein of unknown function (DUF3641); This domain family is found in bacteria and eukaryotes, and... - 235.063 4.72E-77 198 - 340 superfamily 256995
rSAM_SeCys radical SAM/Cys-rich domain protein; Members of this protein family have an N-terminal radical SAM... - 507.053 0 22 - 341 multi-dom 234488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13125 PHATRDRAFT_13125 209318 241523 426735 Cre12.g561450.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0005506 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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