28496 (AHC3) PRK05476Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28496	chr_6	(AHC3) PRK05476	345360	347046	+	PRK05476

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448410	Thaps28496.1, Thaps28496.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0209

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0238	0.33	11 380000

Most Highly Correlated Transcripts

5954 PRK05476 0.9745	644 (AK2) PTZ00247 0.9165	bd672 (bd672) NA 0.8904	bd1766 (bd1766) NA 0.8778	10143 hypothetical protein 0.8644	262279 PT_UbiA_chlorophyll 0.8471
11337 hypothetical protein 0.8355	4607 hypothetical protein 0.8353	4700 hypothetical protein 0.8331	bd624 (bd624) Glyco_transf_34 superfamily 0.8328

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SAHH		S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains; S-adenosyl-L-homocysteine...	cl17240	738.499	0	15 - 468	specific	240619
FDH_GDH_like superfamily		Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related...	-	738.499	0	15 - 468	superfamily	266580
PRK05476		S-adenosyl-L-homocysteine hydrolase; Provisional	-	752.726	0	1 - 475	multi-dom	235488

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_18319	PHATRDRAFT_18319	170146	197391	441258	Cre03.g204250.t1.2	AT4G13940.2	347096

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

GO:0004013 GO:0006730 -

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