28544 PLN02775
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
28544 chr_6 PLN02775 554872 555910 - PLN02775

Synonyms

NCBI ID Ensembl Genomes exon ID
7448576 Thaps28544.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0316

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0015
 0.38

Most Highly Correlated Transcripts

23655

hypothetical protein
0.8358

269371

hypothetical protein
0.7802

bd1876

(bd1876) NatB_MDM20 superfamily
0.7758

40958

(TPI1) TIM
0.7671

bd524

(bd524) NA
0.7628

263424

PLN02551
0.7591

30871

HAM1
0.7567

bd1709

(bd1709) NA
0.7354

bd621

(bd621) NA
0.7346

269240

(dnaK) dnaK
0.7278

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02775 Probable dihydrodipicolinate reductase - 414.048 1.17E-145 12 - 300 multi-dom 178374

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_4025 PHATRDRAFT_4025 273052 223921 69405 Cre14.g627850.t1.2 AT3G59890.2 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008839 GO:0009089 -

GO:0008839

4-hydroxy-tetrahydrodipicolinate reductase

Details: 
Catalysis of the reaction: (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+.
GO Category: 
MF

GO:0009089

lysine biosynthetic process via diaminopimelate

Details: 
The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
GO Category: 
BP

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