29867 (ACS2_1) PLN02736
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29867 chr_13 (ACS2_1) PLN02736 690613 692848 + PLN02736

Synonyms

NCBI ID Ensembl Genomes exon ID
7447849 Thaps29867.2, Thaps29867.1, Thaps29867.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0247
 0.36

Most Highly Correlated Transcripts

33104

LDH_like_2
0.9146

269060

Arginase_HDAC superfamily
0.9104

11747

hypothetical protein
0.9032

35401

COG0523
0.9031

6692

hypothetical protein
0.8997

8990

DAP2
0.8982

11615

PRK15061
0.8902

8303

Glyco_trans_1_2
0.8895

9388

hypothetical protein
0.8871

11575

hypothetical protein
0.8842

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LC-FACS_euk Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS); The members of this family are... cl17068 811.007 0 71 - 667 specific 213293
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 811.007 0 71 - 667 superfamily 266508
PLN02736 long-chain acyl-CoA synthetase - 650.624 0 2 - 668 multi-dom 178337

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17720 PHATRDRAFT_17720 208444 70228 418537 Cre12.g507400.t1.2 AT5G27600.1 522340

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0003824 GO:0008152 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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