3017 SNARE_assocThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3017	chr_2	SNARE_assoc	2534005	2535076	-	SNARE_assoc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452945	Thaps3017.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0298

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0186	0.38	2800 0.0000000058

Most Highly Correlated Transcripts

bd1221 (bd1221) recQ_fam 0.8842	263424 PLN02551 0.8679	37539 cpn10 0.8662	22389 hypothetical protein 0.8438	35164 acolac_lg 0.8385	36186 iojap_ybeB 0.8343
22221 hypothetical protein 0.8333	268062 PRK14293 0.8319	27873 PLN02274 0.831	30478 (hisH) PLN02617 0.827

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SNARE_assoc		SNARE associated Golgi protein; This is a family of SNARE associated Golgi proteins. The yeast...	cl00429	66.5413	1.18E-13	185 - 302	specific	255296
SNARE_assoc superfamily		SNARE associated Golgi protein; This is a family of SNARE associated Golgi proteins. The yeast...	-	66.5413	1.18E-13	185 - 302	superfamily	260418

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44266	PHATRDRAFT_44266	182177	232589	452496	Not available	Not available	360349

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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