3021 TAF6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3021 chr_2 TAF6 2545150 2546782 - TAF6

Synonyms

NCBI ID Ensembl Genomes exon ID
7452947 Thaps3021.2, Thaps3021.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0145
 0.29

Most Highly Correlated Transcripts

13448

Sec1
0.9058

12836

EEP superfamily
0.881

12899

AAA
0.8787

bd1849

(bd1849) NA
0.8674

20579

hypothetical protein
0.8604

16114

PLN02350
0.8528

bd877

(bd877) NA
0.8426

23791

hypothetical protein
0.8379

5927

UBQ superfamily
0.8365

bd690

(bd690) NA
0.8321

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TAF6 superfamily TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is... - 261.875 1.55E-82 14 - 396 superfamily 173968
TAF6 superfamily TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is... - 261.875 1.55E-82 14 - 396 superfamily 173968

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45009 PHATRDRAFT_45009 158857 286952 Not available Cre07.g349950.t1.1 AT1G04950.3 341977

KEGG

KEGG description KEGG Pathway
Basal transcription factors map03022

GO Terms

GO:0003700 GO:0005634 GO:0051090 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0051090

regulation of sequence-specific DNA binding transcription factor activity

Details: 
Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
GO Category: 
BP

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