30928 PcbC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30928 chr_1 PcbC 2723839 2724846 + PcbC

Synonyms

NCBI ID Ensembl Genomes exon ID
7452541 Thaps30928.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0188

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0081
 0.42

Most Highly Correlated Transcripts

36669

TPT
0.86

14192

PLN02449
0.8597

261400

NA
0.845

36037

Trypsin_2
0.8432

31829

CBS_like
0.843

268592

VDE superfamily
0.8414

36235

p450 superfamily
0.8402

262510

Alg6_Alg8 superfamily
0.8369

22673

NA
0.8329

17214

PLN02512
0.8281

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DIOX_N superfamily non-haem dioxygenase in morphine synthesis N-terminal; This is the highly conserved N-terminal... - 118.112 1.62E-32 11 - 128 superfamily 258418
DIOX_N superfamily non-haem dioxygenase in morphine synthesis N-terminal; This is the highly conserved N-terminal... - 118.112 1.62E-32 11 - 128 superfamily 258418
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 101.717 8.92E-27 183 - 287 superfamily 251775
2OG-FeII_Oxy superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 101.717 8.92E-27 183 - 287 superfamily 251775
PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] - 267.309 5.36E-87 8 - 327 multi-dom 226022

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd480 PHATRDRAFT_bd480 Not available 285001 Not available Cre10.g466700.t1.1 AT1G35190.1 556079

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0016216 GO:0017000 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0016216

isopenicillin-N synthase activity

Details: 
Catalysis of the reaction: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O(2) = 2 H(2)O + isopenicillin N.
GO Category: 
MF

GO:0017000

antibiotic biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
GO Category: 
BP

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