30986 SCOThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30986	chr_1	SCO	2195700	2196369	-	SCO

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453415	Thaps30986.2, Thaps30986.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0138

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0123	0.31	0.14 1300

Most Highly Correlated Transcripts

7081 Peptidase_S9 superfamily 0.9156	20405 GRX_GRXh_1_2_like 0.9005	3071 NA 0.8993	9729 COG0398 0.8764	11331 GcvR 0.8663	5225 Nsp1_C superfamily 0.8655
35956 SIR2 superfamily 0.8629	9274 hypothetical protein 0.8617	2515 nst superfamily 0.8591	4171 hypothetical protein 0.8583

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SCO		SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1...	cl00388	175.099	1.16E-55	27 - 171	specific	239266
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	175.099	1.16E-55	27 - 171	superfamily	260398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14770	PHATRDRAFT_14770	207124	306338	239853	Cre17.g732850.t1.2	AT3G08950.1	362456

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 -

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