31665 LepA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31665 chr_1 LepA 551549 554313 + LepA

Synonyms

NCBI ID Ensembl Genomes exon ID
7449108 Thaps31665.3, Thaps31665.1, Thaps31665.2, Thaps31665.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0273

Most Highly Correlated Transcripts

23667

hypothetical protein
0.9037

5053

hypothetical protein
0.9008

270120

Uup
0.8938

21742

RNase_PH_RRP45
0.8927

22627

hypothetical protein
0.8919

268136

COG1054
0.8919

263872

PRK14329
0.8913

21698

hypothetical protein
0.8876

22840

hypothetical protein
0.8848

15114

Zinc_peptidase_like superfamily
0.8837

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 212.394 1.04E-63 161 - 363 superfamily 266525
LepA_C superfamily GTP-binding protein LepA C-terminus; This family consists of the C-terminal region of several pro-... - 145.045 1.72E-40 715 - 827 superfamily 203441
LepA_C superfamily GTP-binding protein LepA C-terminus; This family consists of the C-terminal region of several pro-... - 145.045 1.72E-40 715 - 827 superfamily 203441
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 89.4734 3.55E-21 626 - 707 superfamily 261447
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 89.4356 3.94E-21 374 - 471 superfamily 261449
LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] - 573.36 0 154 - 827 multi-dom 223557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1626 PHATRDRAFT_16018 PHATRDRAFT_16018 209620 213147 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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