32459 PspAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32459	chr_2	PspA	2212869	2214063	+	PspA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450436	Thaps32459.1, Thaps32459.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0113

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0263	0.34	0.55 17

Most Highly Correlated Transcripts

261608 PLN02585 0.8967	28125 PLN00203 0.8863	2553 MDR1 0.8811	31169 PRX_BCP 0.875	26991 GRX_GRXh_1_2_like 0.8745	17214 PLN02512 0.8651
38306 Chloroa_b-bind 0.852	40073 gpsA 0.8515	1788 hypothetical protein 0.8499	22792 Rab1_Ypt1 0.84

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ApoLp-III_like superfamily		Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the...	-	133.561	7.10E-37	105 - 330	superfamily	267466
PspA		Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal...	-	164.798	1.49E-48	105 - 329	multi-dom	224755

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_19661	PHATRDRAFT_19661	268075	246578	465242	Cre13.g583550.t1.2	AT1G65260.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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