32716 PRK05290
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32716 chr_3 PRK05290 1394706 1396577 + PRK05290

Synonyms

NCBI ID Ensembl Genomes exon ID
7451278 Thaps32716.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0492

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0209
 0.34

Most Highly Correlated Transcripts

3625

FNR_like superfamily
0.8411

262692

0.8292

19837

AdoMet_MTases superfamily
0.8061

bd1885

(bd1885) NA
0.8015

11984

hypothetical protein
0.7972

4108

hypothetical protein
0.7925

1308

ANK
0.7885

5119

MATE_like superfamily
0.7767

262258

P_permease
0.7683

2010

hypothetical protein
0.7655

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK05290 hybrid cluster protein; Provisional cl19102 798.938 0 70 - 622 specific 235391
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 798.938 0 70 - 622 superfamily 267455

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12416 PHATRDRAFT_12416 Not available Not available Not available Cre09.g393543.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005737 GO:0006118 GO:0016491 GO:0005506 GO:0016661 -

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0016661

oxidoreductase activity, acting on other nitrogenous compounds as donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a nitrogenous group, excluding NH and NH2 groups, acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

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