3326 TauDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3326	chr_3	TauD	675378	676800	-	TauD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441702	Thaps3326.2, Thaps3326.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0024

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0260	0.25	6.6 43

Most Highly Correlated Transcripts

261608 PLN02585 0.9642	24669 hypothetical protein 0.9484	22194 DUF1995 superfamily 0.948	5077 PLN00015 0.9412	283 FHIT 0.9401	3974 (UroD2) URO-D 0.9391
7442 hypothetical protein 0.9378	33566 (TPP1) sigpep_I_bact 0.9376	270378 hypothetical protein 0.9374	2036 hypothetical protein 0.9357

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TauD		Taurine catabolism dioxygenase TauD, TfdA family; This family consists of taurine catabolism...	cl00184	66.6813	8.19E-13	94 - 433	specific	251459
CAS_like superfamily		Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG)...	-	66.6813	8.19E-13	94 - 433	superfamily	260242

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49639	PHATRDRAFT_49639	242821	258537	79115	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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