33566 (TPP1) sigpep_I_bact
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33566 chr_4 (TPP1) sigpep_I_bact 1269946 1270500 + sigpep_I_bact

Synonyms

NCBI ID Ensembl Genomes exon ID
7446108 Thaps33566.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0102
 0.20

Most Highly Correlated Transcripts

270222

0.9604

bd1765

(bd1765) NA
0.939

3326

TauD
0.9376

38306

Chloroa_b-bind
0.9328

268474

PLN02657
0.9303

bd258

(bd258) HU
0.9294

bd1078

(bd1078) NA
0.9263

38924

PLN02627
0.926

5077

PLN00015
0.9225

261608

PLN02585
0.9152

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89... cl10465 78.3963 3.34E-19 31 - 168 specific 119398
Peptidase_S24_S26 superfamily The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase... - 78.3963 3.34E-19 31 - 168 superfamily 263975
sigpep_I_bact signal peptidase I, bacterial type; This model represents signal peptidase I from most bacteria.... - 134.294 1.13E-39 17 - 174 multi-dom 233790

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9241 PHATRDRAFT_9241 205363 258043 350660 Cre07.g344350.t1.2 AT3G24590.1 Not available

KEGG

KEGG description KEGG Pathway
Protein export map03060

GO Terms

GO:0006508 GO:0008236 GO:0016020 GO:0009004 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0009004

NA

Details: 
NA
GO Category: 
NA

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