268474 PLN02657
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268474 chr_3 PLN02657 1010026 1011444 - PLN02657

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps268474.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0260
 0.25

Most Highly Correlated Transcripts

270316

hypothetical protein
1

8248

HopJ superfamily
0.9388

33566

(TPP1) sigpep_I_bact
0.9303

3326

TauD
0.9258

5077

PLN00015
0.9257

37294

AarF
0.9213

31012

(Cpx1) PLN02873
0.9206

22650

17beta-HSD1_like_SDR_c
0.9132

2036

hypothetical protein
0.9117

3974

(UroD2) URO-D
0.9085

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SDR_a5 atypical (a) SDRs, subgroup 5; This subgroup contains atypical SDRs, some of which are identified... cl09931 173.576 4.34E-51 133 - 355 specific 187554
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 173.576 4.34E-51 133 - 355 superfamily 263925
PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase - 614.465 0 73 - 458 multi-dom 178263

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30690 PHATRDRAFT_30690 237216 254226 464355 Cre01.g042800.t1.2 AT5G18660.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0016628 GO:0016631 GO:0018498 GO:0018499 GO:0018500 GO:0018501 GO:0018502 GO:0018503 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0016628

oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP.
GO Category: 
MF

GO:0016631

enoyl-[acyl-carrier-protein] reductase activity

Details: 
Catalysis of the reaction: acyl-[acyl-carrier protein] + NAD(P)+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NAD(P)H + H+.
GO Category: 
MF

GO:0018498

2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase activity

Details: 
Catalysis of the reaction: cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol + NAD+ = NADH + H+ + 3-(2,3-dihydroxyphenyl)propionate.
GO Category: 
MF

GO:0018499

cis-2,3-dihydrodiol DDT dehydrogenase activity

Details: 
Catalysis of the reaction: cis-2,3-dihydrodiol DDT + NADP+ = NADPH + 2,3-dihydroxy DDT.
GO Category: 
MF

GO:0018500

trans-9R,10R-dihydrodiolphenanthrene dehydrogenase activity

Details: 
Catalysis of the reaction: trans-9R,10R-dihydrodiolphenanthrene + NAD+ = NADH + H+ + 9,10-dihydroxyphenanthrene.
GO Category: 
MF

GO:0018501

cis-chlorobenzene dihydrodiol dehydrogenase activity

Details: 
Catalysis of the conversion of a di- or tetrachlorinated dienol to the corresponding catechol.
GO Category: 
MF

GO:0018502

2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase activity

Details: 
Catalysis of the reaction: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol + NAD+ = NADH + H+ + 2,5-dichlorohydroquinone.
GO Category: 
MF

GO:0018503

trans-1,2-dihydrodiolphenanthrene dehydrogenase activity

Details: 
Catalysis of the reaction: trans-1,2-dihydrodiolphenanthrene + NAD+ = H+ + NADH + 1,2-dihydroxyphenanthrene.
GO Category: 
MF

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