33576 SelR superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33576	chr_4	SelR superfamily	888612	889412	+	SelR superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453340	Thaps33576.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0011

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0028	0.44

Most Highly Correlated Transcripts

36037 Trypsin_2 0.8694	bd813 (bd813) NA 0.8518	19977 TRX_family 0.8341	37934 GRX_PICOT_like 0.8138	16075 tpt 0.8047	261882 Thioredoxin_like superfamily 0.7866
36078 PRX5_like 0.7802	31751 PKCI_related 0.7797	36641 Aldolase_Class_I superfamily 0.7778	38769 PLN00033 0.7754

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SelR superfamily		SelR domain; Methionine sulfoxide reduction is an important process, by which cells regulate...	-	154.606	1.04E-46	95 - 244	superfamily	265802

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_7718	PHATRDRAFT_7718	271166	192267	58898	Cre01.g042050.t1.2	AT1G53670.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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