337 TEF1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
337 chr_3 TEF1 1417816 1419765 + TEF1

Synonyms

NCBI ID Ensembl Genomes exon ID
7441940 Thaps337.3, Thaps337.1, Thaps337.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0285

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9224

268443

SAICAR_synt_Sc
0.9178

38469

WD40
0.9135

13794

WD40
0.9122

6997

hypothetical protein
0.9121

35136

NA
0.9121

268859

(GGTB1) PLN03201
0.9118

36419

RabGAP-TBC
0.9115

2622

hypothetical protein
0.9113

28004

hypothetical protein
0.9112

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 331.763 3.50E-110 160 - 384 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 331.763 3.50E-110 160 - 384 superfamily 266525
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 103.071 4.10E-26 482 - 587 superfamily 261448
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 68.3208 4.51E-14 392 - 473 superfamily 261449
TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] - 397.824 8.87E-133 158 - 588 multi-dom 227581

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15121 PHATRDRAFT_15121 274533 214754 Not available Cre13.g565750.t1.2 AT5G10630.1 318941

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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