38469 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38469 chr_20 WD40 184862 186442 - WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7443333 Thaps38469.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0302

Most Highly Correlated Transcripts

262088

CHD
0.9139

337

TEF1
0.9135

39741

(APM3) AP-3_Mu3_Cterm
0.9106

31822

WD40
0.9056

28004

hypothetical protein
0.9044

267979

HCO3_cotransp superfamily
0.9027

23615

hypothetical protein
0.8983

15822

WD40 superfamily
0.8944

24720

hypothetical protein
0.8944

36476

WD40 superfamily
0.8912

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 211.425 1.09E-63 138 - 423 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 211.425 1.09E-63 138 - 423 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 172.195 2.17E-47 132 - 422 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29608 PHATRDRAFT_29608 205486 234381 451907 Cre06.g251951.t1.1 AT5G13480.1 287095

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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