34176 AdoMet_MTases superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34176	chr_5	AdoMet_MTases superfamily	297801	299519	+	AdoMet_MTases superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447286	Thaps34176.3, Thaps34176.4, Thaps34176.2, Thaps34176.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0141	0.18	1.7 250

Most Highly Correlated Transcripts

262018 hypothetical protein 0.9488	21959 hypothetical protein 0.9393	34021 Methyltrn_RNA_3 0.9353	268598 COG1094 0.9322	24439 hypothetical protein 0.9285	23210 hypothetical protein 0.9256
261270 0.9253	6835 DUF947 0.9231	268880 WD40 superfamily 0.9205	22417 Sun 0.9202

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AdoMet_MTases superfamily		S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases...	-	233.17	1.63E-73	253 - 478	superfamily	266528

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14149	PHATRDRAFT_14149	141427	320181	43605	Cre07.g323450.t1.2	AT5G40530.1	378705

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments