34585 PLN02389
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34585 chr_6 PLN02389 977202 978698 + PLN02389

Synonyms

NCBI ID Ensembl Genomes exon ID
7445953 Thaps34585.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0225
 0.26

Most Highly Correlated Transcripts

bd1161

(bd1161) NA
0.9251

bd718

(bd718) PRK10387
0.9152

bd634

(bd634) NA
0.9126

3353

FMN_dh
0.9114

260953

COG2423
0.9103

4370

hypothetical protein
0.9023

36208

(GDCT) PLN02319
0.8952

bd1192

(bd1192) Acyl_ACP_Desat
0.8933

34030

(MAO1) PLN03129
0.889

270261

hypothetical protein
0.8883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 79.6849 2.77E-17 192 - 403 superfamily 100105
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 79.6849 2.77E-17 192 - 403 superfamily 100105
BATS Biotin and Thiamin Synthesis associated domain; Biotin synthase (BioB), , catalyses the last step... cl06149 114.886 5.64E-31 364 - 465 specific 214877
BATS superfamily Biotin and Thiamin Synthesis associated domain; Biotin synthase (BioB), EC:2.8.1.6, catalyses the... - 114.886 5.64E-31 364 - 465 superfamily 262800
PLN02389 biotin synthase - 649.99 0 99 - 493 multi-dom 215219

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21296 PHATRDRAFT_21296 272671 221211 423761 Cre06.g261150.t1.2 AT2G43360.1 526228

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004076 GO:0009102 GO:0003824 GO:0005506 -

GO:0004076

biotin synthase activity

Details: 
Catalysis of the reaction: 2 S-adenosyl-L-methionine + dethiobiotin + S(2-) = 2 5'-deoxyadenosine + 2 L-methionine + biotin + H(+).
GO Category: 
MF

GO:0009102

biotin biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.
GO Category: 
BP

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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