34730 carb_red_sniffer_like_SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34730 chr_6 carb_red_sniffer_like_SDR_c 1127380 1128604 - carb_red_sniffer_like_SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7442377 Thaps34730.3, Thaps34730.1, Thaps34730.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0326

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0229
 0.40

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.9472

bd690

(bd690) NA
0.9361

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9334

bd1934

(bd1934) NA
0.9309

bd877

(bd877) NA
0.9102

bd1840

(bd1840) NA
0.9091

1249

hypothetical protein
0.906

4408

hypothetical protein
0.8953

bd1841

(bd1841) CAP10 superfamily
0.8883

bd410

(bd410) HNHc
0.8819

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
carb_red_sniffer_like_SDR_c carbonyl reductase sniffer-like, classical (c) SDRs; Sniffer is an NADPH-dependent carbonyl... cl09931 193.281 2.66E-59 97 - 334 specific 187586
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 193.281 2.66E-59 97 - 334 superfamily 263925

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12043 PHATRDRAFT_12043 276030 296974 77459 Not available AT4G20760.1 530496

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0051341 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0051341

regulation of oxidoreductase activity

Details: 
Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
BP

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