35108 AAA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35108 chr_6 AAA 972213 974988 - AAA

Synonyms

NCBI ID Ensembl Genomes exon ID
7445950 Thaps35108.2, Thaps35108.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Most Highly Correlated Transcripts

32894

Ribosomal_L13
0.9062

264002

guanyl nucleotide exchange factor
0.9019

269925

AAA_12 superfamily
0.9004

4108

hypothetical protein
0.8997

36007

Aldolase_II superfamily
0.8981

268443

SAICAR_synt_Sc
0.8971

38472

HA2
0.8916

270004

hypothetical protein
0.8909

262261

PP2Cc
0.8891

25767

hypothetical protein
0.8878

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 81.4235 1.28E-17 630 - 767 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 81.4235 1.28E-17 630 - 767 superfamily 267297
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 81.2657 1.37E-17 632 - 768 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_2208 PHATRDRAFT_2208 138383 296061 63324 Cre01.g022000.t1.1 AT3G27120.1 529393

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000166 GO:0017111 GO:0005524 GO:0008568 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008568

microtubule-severing ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the severing of a microtubule at a specific spot along its length, coupled to the hydrolysis of ATP.
GO Category: 
MF

Add comment

Log in to post comments