35407 PLN00157
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35407 chr_7 PLN00157 866622 866997 - PLN00157

Synonyms

NCBI ID Ensembl Genomes exon ID
7449231 Thaps35407.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0095

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

6948

PLN00157
0.8999

33270

PLN00157
0.8689

3184

H4
0.8603

35229

H4
0.8571

35279

(H4_2) H4
0.8517

38460

SKP1
0.836

9353

(Tp_HSF_1c) HSF_DNA-bind superfamily
0.8297

40728

V_ATPase_I
0.8293

22931

Glycos_transf_1 superfamily
0.8242

37123

(VAT2) V-ATPase_V1_A
0.8205

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 195.246 4.47E-65 15 - 119 superfamily 238029
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 195.246 4.47E-65 15 - 119 superfamily 238029
PLN00157 histone H2A; Provisional - 207.01 1.98E-69 14 - 124 multi-dom 177758

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26802 PHATRDRAFT_26802 Not available Not available 66170 Not available AT3G20670.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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