9353 (Tp_HSF_1c) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9353 chr_13 (Tp_HSF_1c) HSF_DNA-bind superfamily 207400 209379 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452986 Thaps9353.5, Thaps9353.2, Thaps9353.4, Thaps9353.1, Thaps9353.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0410

Most Highly Correlated Transcripts

263610

COG3899
0.9062

261357

NAD_binding_8 superfamily
0.8857

263599

COG3899
0.8832

263051

ZntA
0.8829

4556

hypothetical protein
0.8778

262120

ABC_ATPase superfamily
0.8754

22168

DUF221 superfamily
0.8742

12076

EPL1 superfamily
0.8739

3901

hypothetical protein
0.8738

11713

hypothetical protein
0.8731

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 69.0658 2.46E-14 320 - 398 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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