38460 SKP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38460 chr_20 SKP1 236680 237299 - SKP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7443340 Thaps38460.2, Thaps38460.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0181

Most Highly Correlated Transcripts

35407

PLN00157
0.836

269593

(RPT4) RPT1
0.8297

263391

EMP70 superfamily
0.8164

24658

DUF605
0.8157

10985

UBCc
0.8104

262936

Aa_trans superfamily
0.803

25653

hypothetical protein
0.7981

23029

hypothetical protein
0.7977

5039

hypothetical protein
0.7967

8136

hypothetical protein
0.7946

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 133.831 7.47E-41 80 - 155 superfamily 250639
Skp1 superfamily Skp1 family, dimerization domain; Skp1 family, dimerization domain. - 133.831 7.47E-41 80 - 155 superfamily 250639
Skp1 Found in Skp1 protein family; Family of Skp1 (kinetochore protein required for cell cycle... cl17737 92.3564 1.30E-24 1 - 105 specific 214704
Skp1_POZ superfamily Skp1 family, tetramerization domain; Skp1 family, tetramerization domain. - 92.3564 1.30E-24 1 - 105 superfamily 266799
SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] - 140.079 2.20E-42 1 - 155 multi-dom 227528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17276 PHATRDRAFT_17276 212068 223396 434598 Cre12.g501200.t1.2 AT1G75950.1 354552

KEGG

KEGG description KEGG Pathway
Circadian rhythm - mammal map04710

GO Terms

Not available -

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