35723 HepA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35723 chr_7 HepA 970444 972179 + HepA

Synonyms

NCBI ID Ensembl Genomes exon ID
7444125 Thaps35723.3, Thaps35723.1, Thaps35723.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0293

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

8366

hypothetical protein
0.9044

21190

SAC3_GANP
0.8899

268352

P-ATPase-V
0.8846

262858

(IKI3) IKI3
0.8828

23332

COG0790
0.8819

8762

SNF2_N
0.8816

4347

hypothetical protein
0.8804

1079

hypothetical protein
0.8789

24665

hypothetical protein
0.8785

24182

Gryzun
0.874

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 91.9156 5.35E-22 338 - 444 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 91.9156 5.35E-22 338 - 444 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 65.0512 1.59E-12 1 - 111 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 65.0512 1.59E-12 1 - 111 superfamily 266587
HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and... - 312.439 6.09E-96 1 - 490 multi-dom 223627

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11009 PHATRDRAFT_11009 147555 Not available Not available Cre16.g687301.t1.1 AT3G54280.1 489603

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005524 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

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