36045 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36045	chr_8	UBCc	946713	947216	+	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452867	Thaps36045.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0226

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0233	0.34	0.000038 0.14

Most Highly Correlated Transcripts

27873 PLN02274 0.9138	bd1945 (bd1945) NA 0.9128	31415 hypothetical protein 0.91	33718 Methyltransf_4 superfamily 0.9005	10853 hypothetical protein 0.8982	21397 Nop52 superfamily 0.8915
40223 PLN02347 0.8867	39022 COG2319 0.8812	32140 DHDPS 0.8803	268238 PRK05192 0.8795

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	114.607	1.64E-32	27 - 140	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	114.607	1.64E-32	27 - 140	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_10724	PHATRDRAFT_10724	273521	206364	452424	Cre02.g141450.t1.2	AT5G42990.1	Not available

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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