36339 (ITS1) PLN02882
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36339 chr_10 (ITS1) PLN02882 1008340 1012182 - PLN02882

Synonyms

NCBI ID Ensembl Genomes exon ID
7450776 Thaps36339.1, Thaps36339.3, Thaps36339.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0316

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

264188

COG1026
0.8487

262047

Ube1
0.8336

41952

EF-G
0.8216

22808

SpoU_methylase superfamily
0.8139

30301

PLN03206
0.8119

19913

ybbN
0.8084

3009

hypothetical protein
0.8014

2157

D123 superfamily
0.7962

263495

PRK11824
0.792

28441

eIF-3c_N superfamily
0.7913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IleRS_core catalytic core domain of isoleucyl-tRNA synthetases; Isoleucine amino-acyl tRNA synthetases (IleRS... cl00015 336.512 3.21E-105 420 - 655 specific 173909
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 259.857 1.10E-77 39 - 181 superfamily 260139
Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA... cl12020 237.45 7.54E-72 655 - 860 specific 153415
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 237.45 7.54E-72 655 - 860 superfamily 264512
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 259.857 1.10E-77 39 - 181 superfamily 260139
PLN02882 aminoacyl-tRNA ligase - 1948.76 0 1 - 1159 multi-dom 215477

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29824 PHATRDRAFT_29824 167622 206783 469724 Cre16.g651750.t1.2 AT4G10320.1 557837

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004822 GO:0006428 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004822

isoleucine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-isoleucine + ATP + tRNA(Ile) = L-isoleucyl-tRNA(Ile) + AMP + diphosphate + 2 H(+).
GO Category: 
MF

GO:0006428

isoleucyl-tRNA aminoacylation

Details: 
The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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